Anatomy & Physiology
Review Article
Volume 3 Issue 1 - 2017
Laminins of Hydra ECM: A Comparative Analysis of Hydra and Vertebrate Laminins Based on Current Genomic and ETS DataBases
Michael P Sarras*
Department of Cell Biology and Anatomy, Rosalind Franklin University of Medicine and Science, USA
Received: December 09, 2016 | Published: January 19, 2017
*Corresponding author: Michael P Sarras, Department of Cell Biology and Anatomy, Rosalind Franklin University of Medicine and Science, 3333 Green Bay Road, North Chicago, IL 60064, USA, Email:
Citation: Sarras MP (2017) Laminins of Hydra ECM: A Comparative Analysis of Hydra and Vertebrate Laminins Based on Current Genomic and ETS DataBases. MOJ Anat & Physiol 3(1): 00078. DOI: 10.15406/mojap.2017.03.00078


Extracellular matrix (ECM) arose when the earliest metazoans with defined tissues diverged some 500 million years ago. The Cnidarians, which include Hydra, are one of these Taxa. Studies beginning in the 1980 used convergent biochemical, cellular, and molecular approaches to determine the structure/function relationships of Hydra ECM. Initial screening of cDNA expression libraries identified laminins as a prominent ECM component localized to the basal lamina of Hydra’s ECM. Those first laminins matched with the vertebrate laminin a (likely α1) and β1 chains. Structure/function studies determined that Hydra laminins were critical to the organism’s ECM structure and the ability of Hydra to regenerate. Since those studies, extensive genomic and EST studies have expanded our understanding of the full spectrum of laminin chains in Hydra (to a total of 6 vertebrate-like laminin chains) and this article will compare Hydra’s laminins to the vertebrate laminins which are known to be involved in embryogenesis, cell physiology, and numerous human diseases.

Keywords: Hydra; Extracellular matrix (ECM); Laminin; Vertebrates; Genomic data bases; EST data bases


ECM: Extracellular Matrix; GF: Growth Factors; MMPs: Matrix Metalloproteinases; LAMA1-5: Laminin Alpha1-5 (α1-5); LAMB1-3: Laminin Beta1-3 (β1-3); LAMC1-3: Laminin Gamma 1-3 (γ1-3); Laminin-111: Laminin Heterotrimeric Molecule Containing a single α1, β1, and γ1 chain; LE domains: Epidermal Growth Factor-like Domain; G Domain: Globular Domain; EST: Expressed Sequence Tags


The extracellular matrix (ECM) is a complex structural and signaling extracellular entity that has multiple cell physiological and developmental functions [1,2]. These functions include:

  1. Providing a structural scaffolding for the epithelium and other cellular tissues.
  2. Providing a binding platform for growth factors (GFs) and other ligands that can affect cells that are in close proximity to the ECM or affect more distant cells once these GFs and ligands are released from the ECM.
  3. Providing signaling motifs within each ECM component that trigger signaling pathways on those cells that are in contact with these motifs or these same peptide motifs that can be released from the ECM molecules via enzymatic reactions to subsequently affect cells.
  4. ECM molecules are able to transfer signals to cells through specialized cell surface receptors, e.g. integrins, that specifically bind to motifs within the various ECM components so as to initiate complex signaling pathways for cell differentiation and cell function (ECM molecules also bind to non integrin cell surface molecules such as syndecans and EGFR); and finally,
  5. Matrix metallo proteases (MMPs) are functionally associated with the ECM in order that ECM components can be modified through hydrolysis. MMPs are involved in many ECM’s functions by acting directly on ECM components or by acting on ECM-associated molecules. These MMP-induced ECM modifications allow for altered matrix structure during morphogenesis and cellular/developmental processes [3]. MMPs also function to release ECM-associated molecules from the ECM to affect cell function.

Given the fundamental function of the ECM of metazoans, it is not surprising to find ECM components in ancient Taxa such as the Cnidaria that represents one of the earliest eukaryotic systems with a defined tissue organization [4]. Cnidarians are composed of an outer ectoderm and inner endoderm with an intervening ECM. Based on molecular studies focused on understanding the components and function of various macromolecules of the ECM in Hydra, we now have a basic understanding of the role of ECM in an early divergent metazoan that arose some 500 million years ago [5-7].

This review focuses on an important component of the ECM, namely laminin; the matrix molecule first cloned and characterized in the Cnidarian, Hydra. Its purpose is to show the highly conserved nature of ECM throughout the Metazoans by highlighting the structure/function relationships of an early laminin form. It does this by comparing this laminin to what we know of vertebrate laminins and our knowledge of the full spectrum of Hydra laminins based on current genomic [8,9] (NCBI Hydra Genome Database: and EST data bases [10] (NCBI Hydra EST Database: studies. The review is organized to discuss

  1. The initial cloning and functional characterization of Hydra laminin,
  2. The composition of vertebrate laminins with potential Hydra analogs, and
  3. The composition of Hydra laminins based on the most current data bases derived from various genomic and EST studies.


Initial cloning and characterization of a Hydra laminin

From the standpoint of divergence of Taxa within the animal kingdom, Cnidarians are the earliest group of metazoans with a defined tissue organization (ectoderm and endoderm) and an ECM. A tree of Taxa divergence is shown in Figure 1. This tree of Taxa with a “Common Tool Kit” of ECM components indicates that Cnidaria, containing Hydra, arose some 500 million years ago, thereby representing one of the earliest metazoan life forms with an ECM [5].

Figure 1: A hieratical tree of metazoans with a “Common Tool Kit” of ECM components. Those Taxa with an asterisk have complete genome data bases available. Cnidaria divergence dates back approximately 500 million years ago.

The basic structure of Hydra’s body wall is shown in Figure 2. As indicated, the entire body wall of Hydra (from the foot process, through the body column, and apically to the tip of head tentacles) is organized as an outer ectoderm and inner endoderm with an intervening ECM (Figure 2, left image). Based on molecular and cellular studies, Hydra’s ECM is itself organized as two basal lamina’s (adjacent to the two epithelial layers) with an intervening interstitial-like matrix composed of fibular collagens as shown in Figure 2, right image. Because of its simplified structure and high regenerative capacity, Hydra has been studied as a model developmental organism since the time of Trembley whose studies were published in 1744 [7].

Hydra exists as a gastric tube with a mouth and several tentacles at the head pole and a peduncle and a basal disk at the foot pole (left diagram). The entire body wall of Hydra (from the tip of the tentacles to the basal disk) is organized as an epithelial bilayer with an intervening ECM along the entire longitudinal axis of the organism. Hydra’s ECM is structured as two subepithelial zones (i.e. basal lamina matrix) with an intervening central fibrous zone (i.e. interstitial matrix). As shown in the composite diagram to the right that utilizes a transmission electron micrograph of Hydra ECM interposed between a drawing of the two cell layers (ectoderm and endoderm), Hydra laminin and Type IV Collagen are localized to the two subepithelial zones of the matrix while Hydra fibrillar collagens (e.g. Hcol-I) are localized to the central fibrous zone or interstitial matrix.

Figure 2: Hydra body plan formed from an epithelial bilayer with an intervening Extracellular matrix (ECM).

Using a combination of biochemical, cellular, and molecular approaches, studies were initiated in the 1980’s to elucidate the structure and function of hydra ECM components [11]. The work involved:

  1. Isolation of Hydra ECM and use of biochemical and immunological approaches to analyze the purified matrix preparation [12],
  2. Use of the purified Hydra ECM preparation to biochemically analyze and to generate a battery of Hydra-specific polyclonal and monoclonal antibodies [13], and
  3. Use of these Hydra specific antibodies as reagents to screen expression cDNA libraries and as probes to characterize the distribution of matrix components in Hydra ECM using morphological techniques [13]. In addition, Hydra-specific antibodies and isolated matrix component domains were also used as blocking reagents to study the role of cell-ECM interactions in Hydra using a number of regeneration bioassays [14]. These functional studies were later complimented with antisense RNA studies to selectively knockdown Hydra ECM components during regenerative processes [11].

While a number of Hydra ECM components were identified in this way, for the purposes of this review we will focus on those studies concerning Hydra laminin, the first molecule to be clearly identified and functionally characterized. Laminin chains were identified using antibodies generated to purified Hydra ECM. Initial antibody screening of expression cDNA libraries isolated clones matching the laminin a chain (likely α1) and β1 chain of vertebrates [13,15]. The complete ORF of the β1 chain was determined while only a partial sequence of the a chain (likely an α1 chain) was obtained. While Hydra laminin is localized to the two subepithelial zones (basal lamina) of Hydra ECM, it is synthesized exclusively by the endoderm, which means that the molecules have to diffuse through the mesoglea to reach the ectodermal layer [13,14]. The location at the basal region of both cell layers (Subepithelial Zones of Hydra ECM as shown in Figure 2) suggests that laminin is required for proper cell function and differentiation. During Hydra ECM regeneration, laminin secretion from the endoderm precedes the secretion of Hydra collagen-I that arises from the ectoderm [16] and inhibition of laminin secretion through a RNA antisense technique will block collagen secretion [17]; indicating cross-talk between the two layers. Earlier studies have already established that antibodies to Hydra laminin will block Hydra morphogenesis [14] and other ECM-related processes such as cell migration [18]. mRNA expression studies found that laminin is up-regulated during regeneration and in situ expression studies found this up-regulation to be associated with the base of head and foot regeneration regions [17]. Potential cell surface binding domains were later identified in the laminin β1 chain along with cell binding proteins that had affinity for these binding domains [13,19]. As indicated, laminin expression was essential for Hydra morphogenesis and regeneration processes based on a number of functional studies [17].

These studies indicated that ECM components, such as laminin, formed early during the divergence of early metazoan groups (e.g. Cnidaria) and these molecules were essential for Hydra cell physiology and developmental/regenerative processes.

Composition of vertebrate laminins

Vertebrate laminins [1,2] are heterotrimeric cross-linked glycoproteins that bind to other matrix components in order to form the complete basement membrane network typically associated with epithelial cells. Laminins predominantly link with collagen IV, nidogens, agrin, and perlecan to form the ECM basement membrane (termed the basal laminin at the level of transmission electron microscopy) [20]. Laminins are composed of three chains, named the alpha (a), beta (b), and gamma (g) chains, that are coded by separate genes. Genomic and biochemical studies with vertebrate systems have identified five a chains, three b chains, and three g chains. These chains are assigned the symbols; LAMA1-5, LAMB1-3, and LAMC1-3. In vivo, we find 16 abg laminin trimers that exist in nature. The reduced number of laminin trimer chain combinations (as compared to the theoretical maximal number of combinations) is due to the biochemical properties of the chains and the distribution of laminins among the various tissues of the body. The most studied heterotrimeric laminin is composed of a α1, β1, and γ1 chain and is termed laminin-111. A diagram of laminin-111 is depicted in Figure 3.

Figure 3: A diagram of the trimeric laminin-111 molecule. Laminin-111 is composed of a single α1, β1, and γ1 chains. A description of the various regions of laminin is discussed in the text.

As discussed, since the original identification of the first laminin in vertebrates, a total of 11 laminin chains have been identified and 6 of these chains have analogs in Hydra (see Section 3 and Table 1). The biochemistry of laminin chains has been well studied [1,2]. All laminin chains have common structural motifs that include:

  1. Large globular laminin N-terminal domains (VI domains),
  2. Rod-like stretches comprised of LE domains in all three types of chains,
  3. Within the LE stretches are a number of globular domains (IV domains in Figure 3) that include; one in the b chain, one in the g chain and two in the a chains (LIVa and LIVb). The b and g chains end with a laminin coiled-coil (G) domain. The a chain contains five G domains (LG1-5). Functionally, the G domains are involved with the trimerization of the heterotrimer. During polymerization of ECM components, laminins interact with one another and also with other matrix components such as collagen IV. Cell surface integrins typically bind to laminin chains through their G domains.

Hydra Laminins Identified from Genomic and EST Analyses

Genomic Analyses

EST Analyses

Alpha chains

Gene ID #

Alpha chains

Accession #:

Laminin α 1


Laminin α 1


Laminin α 2


Laminin α 3


Beta Chain

Gene ID #

Beta Chain

Accession #:

Laminin β1


Laminin β2


Gamma chain

Gene ID #

Gamma chain

Accession #:

Laminin ϒ1


Laminin ϒ1


Table 1: Provides a list all identified Hydra laminins.

Laminins have a critical role during many systemic processes such as embryogenesis [20], wound healing [21,22], and angiogenesis. In addition, laminins are central to many human diseases such as, muscular dystrophy type-1A [23], Pierson syndrome, epidermolysis bullosa [24-26], laryngo-onycho-cutaneous syndrome [27], and tumorigenesis [28,29].

Composition of hydra laminins based on the most current NCBI data bases derived from various genomic and EST studies

Since the cloning and functional characterization of the Hydra laminin β1 chain and the Hydra laminin a  chain (likely α1), no other articles have been published that focus on the detailed characterization of the other Hydra laminins. However, with the development of full genomic sequence data bases [8,9] (NCBI Hydra Genome Database: and EST data bases [10] (NCBI Hydra EST Database:, we now have a better understanding of the full spectrum of Hydra laminins. Based on current NCBI gene and EST data bases, Table 1 provides a list all identified Hydra laminins. Table 1 lists 6 Hydra laminin chains as analogs to vertebrate laminin chains. Some of these laminin chains were co-identified in both genomic studies and EST studies (laminin α1, laminin γ1). Other than Hydra laminin α1, and β1 [13,23], the functions for Hydra laminin a2, a3, β1, b3, and γ1 chains cannot be known without further cellular and molecular analyses.


From available studies and data bases, it is clear that laminins emerged early during the formation of metazoans and in tandem with the appearance of other ECM components. This likely reflects the critical function of ECM in metazoans. ECM functions encompass complex processes involving not only the structural integrity of tissues, but the dynamic nature of ECM/cell interactions as related to cell physiological processes, cell differentiation, morphogenesis, and development in general.


The author wishes to thank those who have developed the genomic and EST data bases that have allowed more in depth study of the relationship of Hydra laminins to vertebrate laminins.


  1. Theocharis AD, Skandalis SS, Gialeli C, Karamanos NK (2016) Extracellular matrix structure. Adv Drug Deliv Rev 97: 4-27.
  2. Mecham RP (2012) Overview of extracellular matrix. Curr Protoc Cell Biol.
  3. Lu P, Takai K, Weaver VM, Werb Z (2011) Extracellular matrix degradation and remodeling in development and disease. Cold Spring Harb Perspect Biol 3(12).
  4. Hynes RO (2012) The evolution of metazoan extracellular matrix. J Cell Biol 196(6): 671-679.
  5. Technau U, Rudd S, Maxwell P, Gordon PM, Saina M, et al. (2005) Maintenance of ancestral complexity and non-metazoan genes in two basal cnidarians. Trends Genet 21 (12): 633-639.
  6. Steele RE, David CN, Technau U (2011) A genomic view of 500 million years of cnidarian evolution. Trends Genet 27(1): 7-13.
  7. Technau U, Steele RE (2011) Evolutionary crossroads in developmental biology: Cnidaria. Development 138(8): 1447-1458.
  8. Chapman JA, Kirkness EF, Simakov O, Hampson SE, Mitros T, et al. (2010) The dynamic genome of Hydra. Nature 464(7288): 592-596.
  9. Steele RE (2012) The Hydra genome: insights, puzzles and opportunities for developmental biologists. Int J Dev Biol 56(6-8): 535-542.
  10. Wenger Y, Galliot B (2013) RNA seq versus genome-predicted transcriptomes: a large population of novel transcripts identified in an Illumina-454 Hydra transcriptome. BMC Genomics 14: 204.
  11. Sarras MP (2012) Components, structure, biogenesis and function of the Hydra extracellular matrix in regeneration, pattern formation and cell differentiation. Int J Dev Biol 56 (6-8): 567-576.
  12. Sarras MP Jr, Madden ME, Zhang XM, Gunwar S, Huff JK, et al. (1991) Extracellular matrix (mesoglea) of Hydra vulgaris. I. Isolation and characterization. Dev Biol 148(2): 481-494.
  13. Sarras MP Jr, Yan L, Grens A, Zhang X, Agbas A, et al. (1994) Cloning and biological function of laminin in Hydra vulgaris. Dev Biol 164(1): 312-324.
  14. Sarras MP Jr, Zhang X, Huff JK, Accavitti MA, St John PL, et al. (1993) Extracellular matrix (mesoglea) of Hydra vulgaris III. Formation and function during morphogenesis of hydra cell aggregates. Dev Biol 157(2): 383-398.
  15. Zhang X, Fei K, Agbas A, Yan L, Zhang J, et al. (2002) Structure and function of an early divergent form of laminin in hydra: a structurally conserved ECM component that is essential for epithelial morphogenesis. Dev Genes Evol 212(4): 159-172.
  16. Deutzmann R, Fowler S, Zhang X, Boone K, Dexter S, et al. (2000) Molecular, biochemical and functional analysis of a novel and developmentally important fibrillar collagen (Hcol-I) in hydra. Development 127(21): 4669-4680.
  17. Shimizu H, Zhang X, Zhang J, Leontovich A, Fei K, et al. (2002) Epithelial morphogenesis in hydra requires de novo expression of extracellular matrix components and matrix metalloproteinases. Development 129(6): 1521-1532.
  18. Zhang X, Sarras MP (1994) Cell-extracellular matrix interactions under in vivo conditions during interstitial cell migration in Hydra vulgaris. Development 120(2): 425-432.
  19. Agbas A, Sarras MP (1994) Evidence for cell surface extracellular matrix binding proteins in Hydra vulgaris. Cell Adhes Commun 2(1): 59-73.
  20. Durbeej M (2010) Laminins. Cell Tissue Res 339(1): 259-268.
  21. Iorio V, Troughton LD, Hamill KJ (2015) Laminins: Roles and Utility in Wound Repair. Adv Wound Care (New Rochelle) 4(4): 250-263.
  22. Hallmann R, Horn N, Selg M, Wendler O, Pausch F, et al. (2005) Expression and function of laminins in the embryonic and mature vasculature. Physiol Rev 85(3): 979-1000.
  23. Zhang X, Vuolteenaho R, Tryggvason K (1996) Structure of the human laminin alpha2-chain gene (LAMA2), which is affected in congenital muscular dystrophy. J Biol Chem 271(44): 27664-27669.
  24. Kivirikko S, McGrath JA, Pulkkinen L, Uitto J, Christiano AM (1996) Mutational hotspots in the LAMB3 gene in the lethal (Herlitz) type of junctional epidermolysis bullosa. Hum Mol Genet 5(2): 231-237.
  25. Muhle C, Jiang QJ, Charlesworth A, Bruckner Tuderman L, Meneguzzi G, et al. (2005) Novel and recurrent mutations in the laminin-5 genes causing lethal junctional epidermolysis bullosa: molecular basis and clinical course of Herlitz disease. Hum Genet 116(1-2): 33-42.
  26. Pulkkinen L, Christiano AM, Airenne T, Haakana H, Tryggvason K, et al. (1994) Mutations in the gamma 2 chain gene (LAMC2) of kalinin/laminin 5 in the junctional forms of epidermolysis bullosa. Nat Genet 6(3): 293-297.
  27. McLean WH, Irvine AD, Hamill KJ, Whittock NV, Coleman Campbell CM, et al. (2003) An unusual N-terminal deletion of the laminin alpha3a isoform leads to the chronic granulation tissue disorder laryngo-onycho-cutaneous syndrome. Hum Mol Genet 12(18): 2395-2409.
  28. Marinkovich MP (2007) Tumour microenvironment: laminin 332 in squamous-cell carcinoma. Nat Rev Cancer 7(5): 370-380.
  29. Tran M, Rousselle P, Nokelainen P, Tallapragada S, Nguyen NT, et al. (2008) Targeting a tumor-specific laminin domain critical for human carcinogenesis. Cancer Res 68(8): 2885-2894.
© 2014-2016 MedCrave Group, All rights reserved. No part of this content may be reproduced or transmitted in any form or by any means as per the standard guidelines of fair use.
Creative Commons License Open Access by MedCrave Group is licensed under a Creative Commons Attribution 4.0 International License.
Based on a work at
Best viewed in Mozilla Firefox | Google Chrome | Above IE 7.0 version | Opera |Privacy Policy